Selected publications
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"Bioenergetic costs and the evolution of noise regulation by microRNAs"
E. Ilker and M. Hinczewski
Proc. Natl. Acad. Sci. 121(9), e2308796121(2024), DOI
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"Shortcuts in stochastic systems and control of biophysical processes"
E. Ilker, Ö. Güngör, B. Kuznets-Speck, J. Chiel, S. Deffner, M. Hinczewski
Phys. Rev. X 12, 021048 (2022), DOI
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"Modeling the growth of organisms validates a general relation between metabolic costs and natural selection"
E. Ilker and M. Hinczewski
Phys. Rev. Lett., 122 (23), 238101 (2019), DOI, bioRχiv
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"Phase separation and nucleation in mixtures of particles with different temperatures"
E. Ilker and J.-F. Joanny
Phys. Rev. Research, 2, 023200 (2020), DOI
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"Controlling the speed and trajectory of evolution with counterdiabatic driving"
S. Iram, E. Dolson, J. Chiel, J. Pelesko, N.Krishnan, Ö. Güngör, B. Kuznets-Speck, S. Deffner, E. Ilker, J. G. Scott, M. Hinczewski
Nature Physics, (2020), DOI, bioRχiv
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"Evolution of a confluent gut epithelium under cyclic stretching"
L. Gérémie, E. Ilker, M. Bernheim-Dennery, C. Cavaniol, J.-L. Viovy, D. Matic Vignjevic, J.-F. Joanny, S. Descroix
Phys. Rev. Research 4, 023032 (2022), DOI
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"Long-time diffusion and energy transfer in polydisperse mixtures of particles with different temperatures"
E. Ilker, M. Castellana, J.-F. Joanny
Phys. Rev. Research 3, 023207 (2021), DOI
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Other publications
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"The Role of Atomistic Processes in Growth of Cu-Ni Metallic/Bimetallic Nanoparticles"
E. Ilker, M. Konuk, M. Madran, M. Gokce, I. Goksal, S. Durukanoğlu
Comput. Mater. Sci. 230, 112429 (2023), DOI
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"An introduction to using counterdiabatic driving to eliminate genetic lag in changing environments"
S. Iram, E. Dolson, J. Chiel, J. Pelesko, N.Krishnan, Ö. Güngör, B. Kuznets-Speck, S. Deffner, E. Ilker, J. G. Scott, M. Hinczewski
Artificial Life Conference Proceedings, 25 (2020)
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"Phase-Change-Material-Based Low-Loss Visible-Frequency Hyperbolic Metamaterials for Ultra- sensitive Label-Free Biosensing"
K.V. Sreekanth, Q. Ouyang, S. Sreejith, S. Zeng, W. Lishu, E. Ilker, W. Dong, M. ElKabbash, Y. Ting, C.T. Lim, M. Hinczewski, G. Strangi, K.-T. Yong, R.E. Simpson, R. Singh
Adv. Opt. Mater. 1900081 (2019), DOI
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"Growth and shape stability of Cu-Ni core-shell nanoparticles: an atomistic perspective"
E. Ilker, M. Madran M. Konuk, S. DurukanoÄŸlu
Chem. Commun. 54 (96), 13583, (2018), DOI
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"Iridescence-free and narrowband perfect light absorption in critically coupled metal high-index dielectric cavities"
M. ElKabbash, E. Ilker, T. Letsou, N. Hoffman, A. Yaney, M. Hinczewski, G. Strangi
Opt. Lett. 42 (18), 3598, (2018), DOI
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"Hyperbolic metamaterials-based plasmonic biosensor for fluid biopsy with single molecule sensitivity"
K.V. Sreekanth, Y. Alapan, M. ElKabbash, E. Ilker, M. Hinczewski, U.A. Gurkan, G. Strangi
EPJ Appl. Metamat. 4, 1 (2017), DOI
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”Noise Filtering and Prediction in Biological Signaling Networks”
D. Hathcock, J. Sheehy, C. Weisenberger, E. Ilker, M. Hinczewski
IEEE Trans. Molecular, Biol. Multi-Scale Commun. 2, 16 (2016), DOI, arXiv
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”Enhancing the Angular Sensitivity of Plasmonic Sensors Using Hyperbolic Metamaterials”
K.V. Sreekanth, Y. Alapan, M. ElKabbash, A.M. Wen, E. Ilker, M. Hinczewski, U.A. Gurkan, N.F. Steinmetz, G. Strangi
Adv. Opt. Mater. 4 (11), 1767, DOI *selected as cover article
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”Extreme sensitivity biosensing platform based on hyperbolic metamaterials”
K.V. Sreekanth, Y. Alapan, M. ElKabbash, E. Ilker, M. Hinczewski, U.A. Gurkan, A. De Luca, G. Strangi
Nature Materials 15, 621 (2016), DOI
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”Simulating cw-ESR Spectrum Using Discrete Markov Model of Single Brownian Trajectory”
E. Ilker
arXiv:1411.3003 [cond-mat.stat-mech] (2015), preprint.
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”Odd q-State Clock Spin-Glass Models in Three Dimensions, Asymmetric Phase Diagrams, and Multiple Algebraically Ordered Phases”
E. Ilker and A.N. Berker
Phys. Rev. E 90, 062112 (2014), DOI, arXiv
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”Overfrustrated and underfrustrated spin glasses in d=3 and 2: Evolution of phase diagrams and chaos including spin-glass order in d=2”
E. Ilker and A.N. Berker
Phys. Rev. E 89, 042139 (2014), DOI, arXiv
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”High q-state clock spin glasses in three dimensions and the Lyapunov exponents of chaotic phases and chaotic phase boundaries”
E. Ilker and A.N. Berker
Phys. Rev. E 87, 032124 (2013), DOI, arXiv